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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_15430970_15432531_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15430970 - 15432531
Intron Length:
1562

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TCCTGTTGTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAGAT
U12 Branch Point Sequence:
TCTGCTTCAGAT
Flanking Amino Acid:
PLVEKDPTMKLWCAAGVNLM
Intron Amino Acid Position:
603

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
74.9
36.3
Major BPS
74.1
0.6
1
69
38.9
Major PPT
73.4
0.53
0.9
72.5
37.7
Minor 5ss
46.6
-0.3
2.5
61.6
43.3
Minor BPS
46.3
-0.2
1.9
65.05
45.6

Associated Gene:

Gene:
MAPK8IP3
Ensembl Gene ID:
ENSAPLG00000014189
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017827
15416893 - 15471888
54996
ENSAPLT00000014877
15417682 - 15471888
54207
ENSAPLT00000047682
15416893 - 15471888
54996
ENSAPLT00000023773
15416893 - 15471888
54996
ENSAPLT00000019488
15416893 - 15471888
54996