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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_15432625_15433489_R

Intron Information:

Intron Rank:
16
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
15432625 - 15433489
Intron Length:
865

Sequence Information:

Terminal Dinucleotides:
GT-TG
5'SS Sequence:
CAG|GTAGATACC
5'SS Class:
major
3'SS Sequence:
TTCCCCACAGCTG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TTCCCCACAGCT
Flanking Amino Acid:
GWSLPAKYKQSPNGGQEDNR
Intron Amino Acid Position:
572

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
72.1
37.7
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
39.7
-0.6
3.1
56.1
33.4
Minor 5ss
35
-1.7
3
46
42.3
Minor BPS
47.2
-0.1
2
71.18
45

Associated Gene:

Gene:
MAPK8IP3
Ensembl Gene ID:
ENSAPLG00000014189
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019488
15416893 - 15471888
54996
ENSAPLT00000017827
15416893 - 15471888
54996
ENSAPLT00000014877
15417682 - 15471888
54207
ENSAPLT00000047682
15416893 - 15471888
54996
ENSAPLT00000023773
15416893 - 15471888
54996