About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_15433617_15435112_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15433617 - 15435112
Intron Length:
1496

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTCAC
5'SS Class:
major
3'SS Sequence:
CTTCTCTCCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTAAC
U12 Branch Point Sequence:
ACAGACTGAAAA
Flanking Amino Acid:
GSRTLEFFPEDDCTSSARRE
Intron Amino Acid Position:
529

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.5
0.48
1
62.1
38.7
Major BPS
57.9
0.2
1.1
59.4
34.8
Major PPT
82.5
0.73
0.7
80.7
24.5
Minor 5ss
30.3
-2.2
2.8
32.1
35.9
Minor BPS
44.7
-0.4
1.8
50.12
40.2

Associated Gene:

Gene:
MAPK8IP3
Ensembl Gene ID:
ENSAPLG00000014189
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017827
15416893 - 15471888
54996
ENSAPLT00000014877
15417682 - 15471888
54207
ENSAPLT00000047682
15416893 - 15471888
54996
ENSAPLT00000023773
15416893 - 15471888
54996
ENSAPLT00000019488
15416893 - 15471888
54996