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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_15441238_15443577_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15441238 - 15443577
Intron Length:
2340

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGGCGA
5'SS Class:
major
3'SS Sequence:
ATTTATTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTATTTATTT
Flanking Amino Acid:
GEFSVRDDFFGMGKEVGNLL
Intron Amino Acid Position:
349

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
62.3
43.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
87.8
0.85
0.8
85.3
34.2
Minor 5ss
30.3
-2.3
3.2
35.6
43
Minor BPS
64.4
0.53
1.7
84.57
36.4

Associated Gene:

Gene:
MAPK8IP3
Ensembl Gene ID:
ENSAPLG00000014189
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047682
15416893 - 15471888
54996