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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_15441238_15449490_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15441238 - 15449490
Intron Length:
8253

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAAAACT
5'SS Class:
strong_major
3'SS Sequence:
ATTTATTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTATTTATTT
Flanking Amino Acid:
GDVDEGADLLGMGKEVGNLL
Intron Amino Acid Position:
308

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
80.5
31.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
87.8
0.85
0.8
85.3
34.2
Minor 5ss
35.5
-1.7
3.1
50.2
45.8
Minor BPS
64.4
0.53
1.7
84.57
36.4

Associated Gene:

Gene:
MAPK8IP3
Ensembl Gene ID:
ENSAPLG00000014189
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017827
15416893 - 15471888
54996