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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_15443596_15445113_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15443596 - 15445113
Intron Length:
1518

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTATC
5'SS Class:
strong_major
3'SS Sequence:
ATGGCTCTCATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCGTAT
U12 Branch Point Sequence:
TTTCTCGTATGG
Flanking Amino Acid:
EGADLLGEFSVRDDFFGMGK
Intron Amino Acid Position:
343

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.8
83.1
28.7
Major BPS
54.1
0.1
1.4
55
42.7
Major PPT
64.8
0.33
0.9
58.1
37.9
Minor 5ss
40.9
-1
2.7
53.5
43.9
Minor BPS
42.6
-0.7
2.4
55.81
45.7

Associated Gene:

Gene:
MAPK8IP3
Ensembl Gene ID:
ENSAPLG00000014189
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047682
15416893 - 15471888
54996