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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_15445126_15449490_R

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
15445126 - 15449490
Intron Length:
4365

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAAAACT
5'SS Class:
strong_major
3'SS Sequence:
ACATGGCCCATAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGGACAT
U12 Branch Point Sequence:
CTTCGCTGGACA
Flanking Amino Acid:
GDVDEGADLLGEFSGMGKEV
Intron Amino Acid Position:
308

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
80.5
31.7
Major BPS
52.4
0.06
1.3
60.7
45.9
Major PPT
55.2
0.12
0.9
46.8
35.9
Minor 5ss
35.5
-1.7
3.1
50.2
45.8
Minor BPS
49
-0
2
64.71
41.6

Associated Gene:

Gene:
MAPK8IP3
Ensembl Gene ID:
ENSAPLG00000014189
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014877
15417682 - 15471888
54207
ENSAPLT00000047682
15416893 - 15471888
54996
ENSAPLT00000023773
15416893 - 15471888
54996
ENSAPLT00000019488
15416893 - 15471888
54996