About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_15451_24891_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
15451 - 24891
Intron Length:
9441

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAAACTC
5'SS Class:
major
3'SS Sequence:
TTTCGCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
ATGGGGATAACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.1
63.2
41.7
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
87.3
0.84
0.7
84.7
30.2
Minor 5ss
35.4
-1.7
3.3
43
44.2
Minor BPS
40
-0.7
2.5
54.08
44.6

Associated Gene:

Gene:
PDPK1
Ensembl Gene ID:
ENSAPLG00000015673
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048498
890 - 25429
24540