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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_15451_25888_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15451 - 25888
Intron Length:
10438

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
TTTCGCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
ATGGGGATAACA
Flanking Amino Acid:
MASTSSHLYDAVPIQSSV
Intron Amino Acid Position:
9

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
67.6
37.6
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
87.3
0.84
0.7
84.7
30.2
Minor 5ss
27.7
-2.6
3
29.4
36.9
Minor BPS
40
-0.7
2.5
54.08
44.6

Associated Gene:

Gene:
PDPK1
Ensembl Gene ID:
ENSAPLG00000015673
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016388
890 - 25912
25023