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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_15455285_15460116_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15455285 - 15460116
Intron Length:
4832

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTACGTGGG
5'SS Class:
major
3'SS Sequence:
GGAATTTCTATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGTCCTGGAATT
Flanking Amino Acid:
LNVFPLADGMCPQDEMSESG
Intron Amino Acid Position:
152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.1
59.9
44.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
65.3
0.35
1
58.1
42.9
Minor 5ss
31.2
-2.2
3.3
37.4
42.4
Minor BPS
48.1
-0
2.1
70.97
40.2

Associated Gene:

Gene:
MAPK8IP3
Ensembl Gene ID:
ENSAPLG00000014189
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019488
15416893 - 15471888
54996
ENSAPLT00000017827
15416893 - 15471888
54996
ENSAPLT00000014877
15417682 - 15471888
54207
ENSAPLT00000023773
15416893 - 15471888
54996