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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_15460169_15463889_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15460169 - 15463889
Intron Length:
3721

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTGTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACAGAT
U12 Branch Point Sequence:
CTTTCCCTCTCT
Flanking Amino Acid:
GRSHRQSWRKSRKERPNSLN
Intron Amino Acid Position:
134

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
83.8
28
Major BPS
57.5
0.19
1
52.7
34.2
Major PPT
81.3
0.7
0.8
81.3
30.7
Minor 5ss
42.2
-0.9
2.9
59.5
45
Minor BPS
40.8
-0.6
3.7
76.35
46.1

Associated Gene:

Gene:
MAPK8IP3
Ensembl Gene ID:
ENSAPLG00000014189
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014877
15417682 - 15471888
54207
ENSAPLT00000047682
15416893 - 15471888
54996
ENSAPLT00000023773
15416893 - 15471888
54996
ENSAPLT00000017827
15416893 - 15471888
54996