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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_15470098_15470862_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15470098 - 15470862
Intron Length:
765

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGCTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCTCGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTTAT
U12 Branch Point Sequence:
GGCTCATGGATT
Flanking Amino Acid:
YNALHQRHTEMIQTYVEHIE
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
74.9
38.1
Major BPS
69
0.47
1.2
61.1
45.5
Major PPT
85.5
0.8
0.7
81
24.1
Minor 5ss
44.1
-0.6
3.2
63.6
48.1
Minor BPS
47.6
-0.1
1.8
62.65
41.3

Associated Gene:

Gene:
MAPK8IP3
Ensembl Gene ID:
ENSAPLG00000014189
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017827
15416893 - 15471888
54996
ENSAPLT00000014877
15417682 - 15471888
54207
ENSAPLT00000047682
15416893 - 15471888
54996
ENSAPLT00000023773
15416893 - 15471888
54996
ENSAPLT00000019488
15416893 - 15471888
54996