About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_15531803_15533515_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15531803 - 15533515
Intron Length:
1713

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGCAGC
5'SS Class:
major
3'SS Sequence:
TTTCTTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACATAT
U12 Branch Point Sequence:
TTTCTTTTCACA
Flanking Amino Acid:
PSAPEYCSQEGGYEYPPPPP
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
67.1
44.6
Major BPS
49.4
-0
1.2
47
38.6
Major PPT
90.8
0.92
0.6
87.1
23.5
Minor 5ss
39.3
-1.2
2.8
43.9
43.7
Minor BPS
61.7
0.36
1.7
75.92
35.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025761
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030107
15522409 - 15535399
12991