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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_15534860_15535290_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15534860 - 15535290
Intron Length:
431

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGCCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
AATCACTTCATG
Flanking Amino Acid:
YLLCTSLCMVGCCFGCCFVP
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
1
78.8
38.3
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
79
0.65
0.8
73.9
31.2
Minor 5ss
49.3
-0
2.8
65.3
45.9
Minor BPS
46.9
-0.3
2
53.71
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025761
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030107
15522409 - 15535399
12991