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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_15548392_15549666_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15548392 - 15549666
Intron Length:
1275

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACATATG
5'SS Class:
major
3'SS Sequence:
TTGTAATCATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TGTTTTTTGACG
Flanking Amino Acid:
GIPFLLRIHQGEHFREVMKR
Intron Amino Acid Position:
1009

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
75.3
40.7
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
65.9
0.36
1
64.8
41.2
Minor 5ss
37.6
-1.4
3.1
50.7
45.8
Minor BPS
69
0.45
1.3
70.47
36.9

Associated Gene:

Gene:
USP7
Ensembl Gene ID:
ENSAPLG00000015128
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037277
15544414 - 15578298
33885
ENSAPLT00000026813
15544103 - 15594676
50574
ENSAPLT00000015848
15541441 - 15578298
36858
ENSAPLT00000015845
15453473 - 15604603
151131
ENSAPLT00000046741
15543966 - 15604603
60638