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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_15549787_15550644_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15549787 - 15550644
Intron Length:
858

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATACT
5'SS Class:
strong_major
3'SS Sequence:
TGTCTGTATCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GCAGTCTTAATT
Flanking Amino Acid:
PATSRTFRIEEIPLDQVDID
Intron Amino Acid Position:
969

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
86.8
27.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
70.3
0.46
1
62.5
43.4
Minor 5ss
37.7
-1.4
2.9
52.3
44.3
Minor BPS
61.6
0.44
1.4
68.65
42.8

Associated Gene:

Gene:
USP7
Ensembl Gene ID:
ENSAPLG00000015128
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026813
15544103 - 15594676
50574
ENSAPLT00000015848
15541441 - 15578298
36858
ENSAPLT00000015845
15453473 - 15604603
151131
ENSAPLT00000046741
15543966 - 15604603
60638
ENSAPLT00000037277
15544414 - 15578298
33885