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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_15551357_15551671_R

Intron Information:

Intron Rank:
25
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
15551357 - 15551671
Intron Length:
315

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
AAATACCACCTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
CTGTTCTAAATA
Flanking Amino Acid:
IWLNSQFREEEITVYPDKHG
Intron Amino Acid Position:
902

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.5
32.9
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
51.5
0.04
1
41.5
38.4
Minor 5ss
26.6
-2.7
3
30.5
43.3
Minor BPS
58.5
0.26
1.7
65.88
41.7

Associated Gene:

Gene:
USP7
Ensembl Gene ID:
ENSAPLG00000015128
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026813
15544103 - 15594676
50574
ENSAPLT00000015848
15541441 - 15578298
36858
ENSAPLT00000015845
15453473 - 15604603
151131
ENSAPLT00000046741
15543966 - 15604603
60638