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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_15559134_15559793_R

Intron Information:

Intron Rank:
17
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
15559134 - 15559793
Intron Length:
660

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CACATCTACATAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTACAT
U12 Branch Point Sequence:
TCTTCCACATCT
Flanking Amino Acid:
LDNEADGNKTMIELSDNENP
Intron Amino Acid Position:
643

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
85
32.3
Major BPS
73.9
0.59
1
81
30.2
Major PPT
59.7
0.22
0.9
53.7
35.3
Minor 5ss
43.9
-0.7
2.9
66.1
38.6
Minor BPS
51.1
0.11
2.1
77.34
44.7

Associated Gene:

Gene:
USP7
Ensembl Gene ID:
ENSAPLG00000015128
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026813
15544103 - 15594676
50574
ENSAPLT00000015848
15541441 - 15578298
36858
ENSAPLT00000015845
15453473 - 15604603
151131
ENSAPLT00000046741
15543966 - 15604603
60638
ENSAPLT00000037277
15544414 - 15578298
33885