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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_15560205_15561307_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15560205 - 15561307
Intron Length:
1103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGCTTT
5'SS Class:
major
3'SS Sequence:
TGTAATTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
TAACCTATAAAT
Flanking Amino Acid:
QEAHLYMQVQIVAEDQFCGH
Intron Amino Acid Position:
564

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1.3
78.8
38.3
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
80.8
0.69
0.9
77.2
41.4
Minor 5ss
45.2
-0.5
3
65.1
46.2
Minor BPS
52.1
0.14
1.7
70.43
39.5

Associated Gene:

Gene:
USP7
Ensembl Gene ID:
ENSAPLG00000015128
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026813
15544103 - 15594676
50574
ENSAPLT00000015848
15541441 - 15578298
36858
ENSAPLT00000015845
15453473 - 15604603
151131
ENSAPLT00000046741
15543966 - 15604603
60638
ENSAPLT00000037277
15544414 - 15578298
33885