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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_15562176_15563262_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15562176 - 15563262
Intron Length:
1087

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCTCTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTATGTAAAAT
Flanking Amino Acid:
VYLNPKGDGKWCKFDDDVVS
Intron Amino Acid Position:
472

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.8
89.7
22.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
82.2
0.72
0.7
74.9
35.5
Minor 5ss
37.9
-1.4
3
51.7
39.1
Minor BPS
46.5
-0.1
2.4
73.28
43.5

Associated Gene:

Gene:
USP7
Ensembl Gene ID:
ENSAPLG00000015128
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037277
15544414 - 15578298
33885
ENSAPLT00000026813
15544103 - 15594676
50574
ENSAPLT00000015848
15541441 - 15578298
36858
ENSAPLT00000015845
15453473 - 15604603
151131
ENSAPLT00000046741
15543966 - 15604603
60638