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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_15563420_15563733_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15563420 - 15563733
Intron Length:
314

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCAAAATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TCTTCTTCAAAA
Flanking Amino Acid:
QTDQNIKINDRFEFPEQLPL
Intron Amino Acid Position:
419

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.7
83.9
30.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
62.2
0.27
1
61.6
38
Minor 5ss
38.4
-1.3
2.9
48.7
47.5
Minor BPS
63
0.4
1.6
72.74
39.3

Associated Gene:

Gene:
USP7
Ensembl Gene ID:
ENSAPLG00000015128
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026813
15544103 - 15594676
50574
ENSAPLT00000015848
15541441 - 15578298
36858
ENSAPLT00000015845
15453473 - 15604603
151131
ENSAPLT00000046741
15543966 - 15604603
60638
ENSAPLT00000037277
15544414 - 15578298
33885