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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_15563844_15564613_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15563844 - 15564613
Intron Length:
770

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTTTC
5'SS Class:
major
3'SS Sequence:
TTAAAATGTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTTCCTTTAAAA
Flanking Amino Acid:
KYDAGEHGLQEAEKGVKFLT
Intron Amino Acid Position:
383

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
76.8
32.7
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
60.8
0.24
1.1
51.8
46.6
Minor 5ss
53.3
0.11
2.3
70.3
40.3
Minor BPS
75.1
0.78
1.3
82.33
31.7

Associated Gene:

Gene:
USP7
Ensembl Gene ID:
ENSAPLG00000015128
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015845
15453473 - 15604603
151131
ENSAPLT00000046741
15543966 - 15604603
60638
ENSAPLT00000037277
15544414 - 15578298
33885
ENSAPLT00000026813
15544103 - 15594676
50574
ENSAPLT00000015848
15541441 - 15578298
36858