About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_15569393_15574836_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15569393 - 15574836
Intron Length:
5444

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTAGT
5'SS Class:
strong_major
3'SS Sequence:
AATACTTTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTTTCCATAGAT
Flanking Amino Acid:
TLFFTNQLRKAVYMMPTEGD
Intron Amino Acid Position:
236

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
83.7
34.8
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
77.9
0.63
0.9
73.9
40.5
Minor 5ss
37.5
-1.4
2.8
52.1
44.3
Minor BPS
61.8
0.45
2
86.83
38.3

Associated Gene:

Gene:
USP7
Ensembl Gene ID:
ENSAPLG00000015128
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026813
15544103 - 15594676
50574
ENSAPLT00000015848
15541441 - 15578298
36858
ENSAPLT00000015845
15453473 - 15604603
151131
ENSAPLT00000046741
15543966 - 15604603
60638
ENSAPLT00000037277
15544414 - 15578298
33885