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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1565215_1565965_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
1565215 - 1565965
Intron Length:
751

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAATTTA
5'SS Class:
strong_major
3'SS Sequence:
GCCTACTACCTAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATGTGAC
U12 Branch Point Sequence:
TGCCTACTACCT
Flanking Amino Acid:
REEKFNPVTPSCYKLLLSEN
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
86.5
23.8
Major BPS
62.5
0.31
1.2
54.8
42.1
Major PPT
59.1
0.21
0.9
50.5
38.1
Minor 5ss
43.1
-0.8
2.9
58.1
46.5
Minor BPS
41.8
-0.5
2
59.74
43.2

Associated Gene:

Gene:
MEIOB
Ensembl Gene ID:
ENSAPLG00000008347
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008663
1559300 - 1571259
11960