About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1566572_1567731_F


Intron Information:

Intron Rank:
7

Intron Class:
major

Intron Phase:
2

Intron Coordinates:
1566572 - 1567731

Intron Length:
1160

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
ATG|GTAAAATGT

5'SS Class:
major

3'SS Sequence:
TCTCTTGATTTAG|T

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTTTGAC

U12 Branch Point Sequence:
TTTCTCTTGATT

Flanking Amino Acid:
DETETSFPIICWDNESIQLA

Intron Amino Acid Position:
210

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
74.3
0.57
1
67.6
38.4

Major BPS
86.5
0.91
0.8
77.4
37.4

Major PPT
74.4
0.55
0.9
73.6
36

Minor 5ss
39.2
-1.2
3.2
53.4
45.6

Minor BPS
75.4
0.88
1.1
88.08
30.2

Associated Gene:

Gene:
MEIOB

Ensembl Gene ID:

Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

1559300 - 1571259
11960