About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1567785_1567870_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1567785 - 1567870
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAATGT
5'SS Class:
major
3'SS Sequence:
ATTTTGTGCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GATTTTTTATTT
Flanking Amino Acid:
LAQSWIPRKTVIFAADVRIN
Intron Amino Acid Position:
228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
67.5
38.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
73.2
0.52
1
65.6
44.9
Minor 5ss
45.1
-0.5
3
65.2
46
Minor BPS
59.5
0.38
1.5
73.06
38.4

Associated Gene:

Gene:
MEIOB
Ensembl Gene ID:
ENSAPLG00000008347
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008663
1559300 - 1571259
11960