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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1568464_1568864_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1568464 - 1568864
Intron Length:
401

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTTAA
5'SS Class:
major
3'SS Sequence:
TTTAAATTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGTCTTTTAAAT
Flanking Amino Acid:
MEEQSKESINLETIVNVYTV
Intron Amino Acid Position:
294

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
73.6
33.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
77.6
0.62
0.9
74.7
39.8
Minor 5ss
42.4
-0.8
2.9
59
45.5
Minor BPS
66.1
0.58
1.3
79.19
36.4

Associated Gene:

Gene:
MEIOB
Ensembl Gene ID:
ENSAPLG00000008347
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008663
1559300 - 1571259
11960