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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1569019_1569359_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1569019 - 1569359
Intron Length:
341

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCAAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTGTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
CATGCTTTAATT
Flanking Amino Acid:
DNVSKVIRNRCSICRFVVNE
Intron Amino Acid Position:
345

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
74.1
36.5
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
83.1
0.74
0.9
80.3
37.3
Minor 5ss
39.8
-1.1
2.9
48.9
41.6
Minor BPS
68
0.64
1.4
76.34
41.1

Associated Gene:

Gene:
MEIOB
Ensembl Gene ID:
ENSAPLG00000008347
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008663
1559300 - 1571259
11960