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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1569544_1570072_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1569544 - 1570072
Intron Length:
529

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
ACGTTATTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
ACGTTATTAACA
Flanking Amino Acid:
CVAEETLGCTVHEFLTLTED
Intron Amino Acid Position:
407

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.1
71.3
40.3
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
68.2
0.41
1
62.7
41.7
Minor 5ss
38
-1.4
2.8
52.3
44.3
Minor BPS
60.8
0.34
1.6
66.3
40.2

Associated Gene:

Gene:
MEIOB
Ensembl Gene ID:
ENSAPLG00000008347
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008663
1559300 - 1571259
11960