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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1573136_1574283_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
1573136 - 1574283
Intron Length:
1148

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GTG|GCACAACAA
5'SS Class:
weak_major
3'SS Sequence:
TCTTTCCTCAGAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAGAA
U12 Branch Point Sequence:
CTTTCCTCAGAG
Flanking Amino Acid:
TDVLSMRFKVYSAI*
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.7
0.23
1.2
44.9
38.7
Major BPS
64.9
0.37
1
61
37.5
Major PPT
63
0.29
1.7
72.3
32.5
Minor 5ss
19.4
-3.5
3.9
26.4
38.9
Minor BPS
49.7
-0.1
2
61.15
46.2

Associated Gene:

Gene:
FAHD1
Ensembl Gene ID:
ENSAPLG00000024457
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025796
1573121 - 1578588
5468