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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_15815969_15816031_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
15815969 - 15816031
Intron Length:
63

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAA|GCAGTCAAG
5'SS Class:
weak_major
3'SS Sequence:
AGTCATGTATGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TATTCAAGGAAA
Flanking Amino Acid:
LEERNKAGQEKNKVLQEKNK
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.7
0.21
1.3
51.3
45.6
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
46.3
-0.2
1.7
51.6
46.2
Minor 5ss
28.8
-2.4
4.1
38.9
41
Minor BPS
43.5
-0.5
2
60.06
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015623
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016276
15815615 - 15823017
7403