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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1589984_1590376_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1589984 - 1590376
Intron Length:
393

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGATGGAT
5'SS Class:
major
3'SS Sequence:
TCTGGCCATACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
TCTTCTCTGACC
Flanking Amino Acid:
LQMVKKKLLEIYPAGIPEEQ
Intron Amino Acid Position:
297

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
71
34.3
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
69.5
0.44
1
61.8
39.2
Minor 5ss
25.5
-2.8
3.5
37.4
47.3
Minor BPS
63.4
0.41
1.7
74.26
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021911
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024129
1588317 - 1592219
3903