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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1590815_1591041_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
1590815 - 1591041
Intron Length:
227

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAAGCAC
5'SS Class:
major
3'SS Sequence:
CTTTCCCCAGGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTGTGAC
U12 Branch Point Sequence:
TGCCCTGTGACC
Flanking Amino Acid:
QIKGVTPEAIGAGELDISSC
Intron Amino Acid Position:
388

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.45
1.1
57.3
42
Major BPS
59
0.22
1.2
52.4
43.3
Major PPT
53.4
0.08
1.7
63.5
32.8
Minor 5ss
30
-2.3
3.3
32.9
42.4
Minor BPS
47.8
-0.1
2
59.56
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021911
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024129
1588317 - 1592219
3903