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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1591691_1591762_F

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
1591691 - 1591762
Intron Length:
72

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CCT|GCATGGGGG
5'SS Class:
weak_major
3'SS Sequence:
CCCCGGCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGGGAC
U12 Branch Point Sequence:
ACCCCCCCCCCC
Flanking Amino Acid:
EELDRILGICLPPPPPPPPP
Intron Amino Acid Position:
509

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
52.8
0.07
1.5
50.7
43.4
Major BPS
42.6
-0.4
1.5
34.5
43.7
Major PPT
61
0.25
0.9
52.8
31.1
Minor 5ss
27.3
-2.6
4.4
46.2
49
Minor BPS
26.3
-1.8
3.4
38.8
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021911
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024129
1588317 - 1592219
3903