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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1601647_1602310_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1601647 - 1602310
Intron Length:
664

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCGGTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATAAAA
U12 Branch Point Sequence:
TTTTCGGTCACA
Flanking Amino Acid:
SYYKHIEPYLGGAPGADLKA
Intron Amino Acid Position:
748

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
85
26.2
Major BPS
56.5
0.16
0.9
63.3
29.1
Major PPT
78
0.63
0.9
72
38
Minor 5ss
41.1
-1
2.5
50.4
46.1
Minor BPS
46.7
-0.2
2.9
74.7
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012415
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012926
1599581 - 1614693
15113