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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_16019749_16022380_R

Intron Information:

Intron Rank:
147163
Intron Class:
major
Intron Phase:
Intron Coordinates:
16019749 - 16022380
Intron Length:
2632

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTGAC
5'SS Class:
major
3'SS Sequence:
CTTTTATTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
ATTTCTTTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1.1
69.1
35.8
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
85.1
0.79
0.7
80
30.8
Minor 5ss
35.9
-1.6
3.3
53.4
43.8
Minor BPS
71
0.74
1.5
85.88
34

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026486
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039965
16019616 - 16023514
3899