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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_16022503_16023411_R

Intron Information:

Intron Rank:
147164
Intron Class:
major
Intron Phase:
Intron Coordinates:
16022503 - 16023411
Intron Length:
909

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTCTG
5'SS Class:
major
3'SS Sequence:
TTGTTTCTACCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTAAC
U12 Branch Point Sequence:
TTGCCCTTCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
67.2
43.7
Major BPS
64.5
0.36
1
65.2
28.2
Major PPT
80.4
0.68
0.9
74.7
40
Minor 5ss
44
-0.7
2.8
58.7
45.8
Minor BPS
69.9
0.71
1.8
85.44
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026486
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039965
16019616 - 16023514
3899