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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1602439_1603113_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1602439 - 1603113
Intron Length:
675

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
CATTTTTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TCTTCCTAAATG
Flanking Amino Acid:
ALNRIDSNALKRVSLNFSSC
Intron Amino Acid Position:
705

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
0.9
73
33.2
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
85.8
0.81
0.8
80.2
31.5
Minor 5ss
29.8
-2.3
2.8
32.3
35.9
Minor BPS
67.4
0.41
1.7
70.75
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012415
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012926
1599581 - 1614693
15113