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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1604610_1604861_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1604610 - 1604861
Intron Length:
252

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTATGGGAA
5'SS Class:
major
3'SS Sequence:
CTTTCTTCAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
CTTTCTTCAACA
Flanking Amino Acid:
LLPARHKRASGCPDDKKITD
Intron Amino Acid Position:
550

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1
63.7
36.1
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
80.8
0.69
0.8
77.3
30
Minor 5ss
34.8
-1.7
3.5
42.5
46.9
Minor BPS
71.7
0.68
1.5
79.34
37.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012415
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012926
1599581 - 1614693
15113