About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1606821_1607397_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1606821 - 1607397
Intron Length:
577

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGGG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAC
U12 Branch Point Sequence:
CCCAGCAGAATT
Flanking Amino Acid:
SYPKDLLLFLSPSDYAATGS
Intron Amino Acid Position:
375

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
69.5
41.5
Major BPS
73.5
0.58
0.9
75.4
28.3
Major PPT
84.7
0.78
0.8
77.7
36.7
Minor 5ss
31.4
-2.1
3.2
40.6
45.6
Minor BPS
39.5
-0.7
2
49.83
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012415
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012926
1599581 - 1614693
15113