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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_16069405_16070774_R

Intron Information:

Intron Rank:
131537
Intron Class:
major
Intron Phase:
Intron Coordinates:
16069405 - 16070774
Intron Length:
1370

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
ATTTACTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TAAATATTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.7
1.08
0.6
96
12.4
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
82
0.72
0.8
78.5
35.1
Minor 5ss
36.2
-1.6
2.9
50.6
45.9
Minor BPS
57.3
0.31
1.6
71.99
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017974
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029101
16068700 - 16071595
2896