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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1607484_1607803_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1607484 - 1607803
Intron Length:
320

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
GTTATCCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
TTTCTCTGATAT
Flanking Amino Acid:
KKNVQLGEDQLSCLAKMVTL
Intron Amino Acid Position:
347

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1.2
75.8
35
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
81.6
0.71
0.9
77.8
36.5
Minor 5ss
36.9
-1.5
2.7
45.6
42.5
Minor BPS
51.1
0.11
1.8
75.63
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012415
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012926
1599581 - 1614693
15113