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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1609987_1610091_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1609987 - 1610091
Intron Length:
105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAAAGA
5'SS Class:
major
3'SS Sequence:
TATTTCCCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
CTTTGTGTACTC
Flanking Amino Acid:
INKLLRSGYQISDGQSLAKL
Intron Amino Acid Position:
184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
65.2
40.7
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
85.2
0.79
0.7
82.4
29.2
Minor 5ss
31.1
-2.2
3.2
40.8
45
Minor BPS
41.8
-0.6
2.4
56.67
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012415
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012926
1599581 - 1614693
15113