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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1610308_1610672_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1610308 - 1610672
Intron Length:
365

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCGGC
5'SS Class:
major
3'SS Sequence:
GGGACCTCTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCATTAT
U12 Branch Point Sequence:
TTCTTCTGACTT
Flanking Amino Acid:
PSFLTTEELQVASSLVSKFE
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1.1
63.4
41.7
Major BPS
72.1
0.55
1.1
62.3
43.7
Major PPT
64.5
0.33
1
58.7
42.9
Minor 5ss
36.8
-1.5
3.3
50.7
45.8
Minor BPS
56.8
0.29
1.7
75.82
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012415
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012926
1599581 - 1614693
15113