Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1611720_1611833_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

1611720 - 1611833

Intron Length:

114

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTGAGTTTC

5'SS Class:

strong_major

3'SS Sequence:

TTTGGGAAATCAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CCTTTAT

U12 Branch Point Sequence:

TTTTTGGGAAAT

Flanking Amino Acid:

TYLCSSSPVNETAVCASVKS

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.6

0.84

0.8

80.1

28.4

Major BPS

71.5

0.54

1.1

63.3

42.8

Major PPT

59.7

0.22

1.1

56.9

46.7

Minor 5ss

39.5

-1.2

2.9

49.4

41.4

Minor BPS

43.4

-0.4

2.6

73.47

43.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000012415

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012926

1599581 - 1614693

15113