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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_16151690_16157323_R

Intron Information:

Intron Rank:
154573
Intron Class:
major
Intron Phase:
Intron Coordinates:
16151690 - 16157323
Intron Length:
5634

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTCT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTATGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
ACATCCTTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
83.3
29
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
76.8
0.6
1
73.3
40.8
Minor 5ss
42.9
-0.8
2.8
60
44.3
Minor BPS
64.6
0.54
1.6
74.92
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030728
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041382
16151534 - 16223840
72307
ENSAPLT00000030786
16147851 - 16157489
9639
ENSAPLT00000023240
16151534 - 16218788
67255