Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_16157364_16216520_R

Intron Information:

Intron Rank:

154574

Intron Class:

major

Intron Phase:

Intron Coordinates:

16157364 - 16216520

Intron Length:

59157

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGT|GTAAGTCTT

5'SS Class:

major

3'SS Sequence:

ATCTCTTTCACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTCAA

U12 Branch Point Sequence:

AAATCTTCAATC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.6

0.6

1.1

74.7

41.5

Major BPS

78.2

0.7

79.9

32.6

Major PPT

81.1

0.7

0.8

75.8

32.1

Minor 5ss

42.1

-0.9

3.1

60.2

44.1

Minor BPS

58.7

0.25

1.5

63.3

35.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030728

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041382

16151534 - 16223840

72307

ENSAPLT00000023240

16151534 - 16218788

67255