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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_16261430_16262892_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16261430 - 16262892
Intron Length:
1463

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTTAGTATT
5'SS Class:
major
3'SS Sequence:
ACTCATATTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTTATATTACTC
Flanking Amino Acid:
RPGLLFSISRGIYSCIHGVH
Intron Amino Acid Position:
726

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.2
83
36.1
Major BPS
83
0.82
0.8
82
24.9
Major PPT
73.6
0.53
0.9
65.7
38.9
Minor 5ss
37.6
-1.4
2.7
45.2
42.4
Minor BPS
50.3
-0
1.9
67.65
38.1

Associated Gene:

Gene:
GRIN2A
Ensembl Gene ID:
ENSAPLG00000004053
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031628
16259639 - 16480336
220698
ENSAPLT00000004160
16259639 - 16350348
90710