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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1628200_1629248_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1628200 - 1629248
Intron Length:
1049

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTCT
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAC
U12 Branch Point Sequence:
TCCAGCTACATT
Flanking Amino Acid:
LIKGYFAEQQHLTPDQIYHV
Intron Amino Acid Position:
270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.2
31.7
Major BPS
78.7
0.71
0.9
69.3
37.7
Major PPT
88
0.86
0.8
80.5
37
Minor 5ss
39.4
-1.2
3.3
56.7
47.6
Minor BPS
40.1
-0.7
2.3
55.31
47.4

Associated Gene:

Gene:
CIAO3
Ensembl Gene ID:
ENSAPLG00000012541
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032876
1624521 - 1635824
11304
ENSAPLT00000013100
1623645 - 1635824
12180