Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_16301012_16303587_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

16301012 - 16303587

Intron Length:

2576

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGCTTT

5'SS Class:

strong_major

3'SS Sequence:

TTTGCAATTCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AACTAAA

U12 Branch Point Sequence:

ATACTTGCAACT

Flanking Amino Acid:

GYNRNLAQGKDPHGPSFTIG

Intron Amino Acid Position:

453

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.4

0.8

87.9

29.3

Major BPS

68.7

0.47

0.9

67.9

Major PPT

77.1

0.61

0.9

67.4

42.7

Minor 5ss

49.8

-0

2.8

73.2

43.7

Minor BPS

44.9

-0.3

2.1

64.48

39.9

Associated Gene:

Gene:

GRIN2A

Ensembl Gene ID:

ENSAPLG00000004053

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031628

16259639 - 16480336

220698

ENSAPLT00000004160

16259639 - 16350348

90710